。
Can you see in the dark at night?
Literal
Night [gen-の] darkness [gen-の] inside [at-で] eyes [subj-が] are-visible-[polite Q-ますか].
目が見える literally 'eyes are visible' actually means 'one can see' — a quirky construction where the sensory ability is attributed to the eyes as subject. The idiom is entirely lexical; 目 here is the subject of the perception-ability predicate. Not 'can you see eyes' but 'can (your) eyes see.'